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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2335275_2335479_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2335275 - 2335479
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTTGT
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATACTCACCA
Flanking Amino Acid:
KDKPVPEQILNYYRANEVQQ
Intron Amino Acid Position:
1438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74.4
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.6
0.69
0.8
73.3
37.2
Minor 5ss
43.7
-0.7
2.8
58.6
40.2
Minor BPS
51.4
0.04
2
69.88
41.9

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944