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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2339309_2339491_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2339309 - 2339491
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAC
5'SS Class:
major
3'SS Sequence:
TCCTCCATGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GTTCTTTCAATT
Flanking Amino Acid:
TLLLHAELLQWSEKPCVPHL
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.9
37.3
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
64.7
0.33
1
58.6
37
Minor 5ss
32.3
-2
3.1
42.2
44.6
Minor BPS
58
0.33
1.5
73.95
37.1

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944
ENSAPLT00000024019
2326313 - 2380223
53911