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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2340557_2341099_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2340557 - 2341099
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
ATTTTGTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGGAT
U12 Branch Point Sequence:
ATTCCCTTACAC
Flanking Amino Acid:
DEQYKILLEKLLLEHCRKHK
Intron Amino Acid Position:
1172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
66.4
0.41
1.4
65.3
43.7
Major PPT
83.4
0.75
0.8
77.1
36.6
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
60.6
0.31
1.7
71.93
38.6

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944
ENSAPLT00000024019
2326313 - 2380223
53911