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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2341186_2342560_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2341186 - 2342560
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
GTGTATTTGACG
Flanking Amino Acid:
NFSGNRNFHMFENELITKLD
Intron Amino Acid Position:
1144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
55.9
0.04
1.6
59.99
42.1

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944