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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2349916_2350596_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2349916 - 2350596
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTAAATCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
VLEVLDRKDVGPTAVHIQLI
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
68.6
0.42
1
59
42.3
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944
ENSAPLT00000024019
2326313 - 2380223
53911