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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2354635_2358899_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2354635 - 2358899
Intron Length:
4265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCTTGACA
5'SS Class:
weak_major
3'SS Sequence:
CCGATGACTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AAGTACTGAACT
Flanking Amino Acid:
ICSTKLTQNGSKTELLFAAL
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.3
57.8
40.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
62.1
0.27
1
50.9
42.6
Minor 5ss
34.1
-1.8
2.9
41.7
44.4
Minor BPS
60
0.39
1.7
74.16
41.8

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020835
2354547 - 2380223
25677