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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2355906_2356753_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2355906 - 2356753
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GAATTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCCTTTTGAATT
Flanking Amino Acid:
TYDFLVFDALVFIISLIGDI
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.5
0.44
1.1
65.7
44.9
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
60
0.39
1.4
71.39
40.7

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944
ENSAPLT00000024019
2326313 - 2380223
53911