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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2359870_2360741_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2359870 - 2360741
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATTACTAATA
Flanking Amino Acid:
FTFRHRSSQESRDKSERAFG
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.9
0.88
0.7
83.5
31.6
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
49
-0
1.9
63.32
36.4

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000020835
2354547 - 2380223
25677
ENSAPLT00000010625
2326280 - 2380223
53944