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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2362995_2364537_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2362995 - 2364537
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTGTTCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TGCTTCCCAGTC
Flanking Amino Acid:
EEKQHFIPFQQIAMETYIRQ
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
65
0.37
1.3
76.1
38
Major PPT
84.7
0.78
0.8
80.7
31.3
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
42.2
-0.6
1.9
51.6
39.8

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020835
2354547 - 2380223
25677
ENSAPLT00000010625
2326280 - 2380223
53944
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911