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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2364611_2365330_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2364611 - 2365330
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGACAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
GTGTGTTGAATT
Flanking Amino Acid:
CGLRRPFGVAVMDITDIIHG
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68
38.9
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
79
0.65
1
72.9
42.2
Minor 5ss
30.2
-2.3
3.2
38.7
46.3
Minor BPS
50.4
0.09
1.9
69.08
42.4

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020835
2354547 - 2380223
25677
ENSAPLT00000010625
2326280 - 2380223
53944
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911