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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2367358_2368207_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2367358 - 2368207
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
GCATGCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TGTCCTCTGATT
Flanking Amino Acid:
KVTAKIDYGNRILGLDLVVR
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
61.1
0.25
1
57.4
43
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
54.3
0.22
1.6
74.1
36.6

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000020835
2354547 - 2380223
25677
ENSAPLT00000010625
2326280 - 2380223
53944