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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2372778_2373618_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2372778 - 2373618
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
CTTTTTCTATTT
Flanking Amino Acid:
HLKEATVKDRGQHETVIPGE
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
69.7
43.7
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
89.1
0.88
0.6
89
20.2
Minor 5ss
42
-0.9
3.1
49
47.2
Minor BPS
49.1
0.01
1.9
71.32
40.7

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020835
2354547 - 2380223
25677
ENSAPLT00000010625
2326280 - 2380223
53944
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911