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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_237737_238079_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
237737 - 238079
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TGCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTGCTTTATTT
Flanking Amino Acid:
ATCIKLFTENKITTKNVFGL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
65.8
42.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83.6
0.76
0.8
81.4
35
Minor 5ss
35.5
-1.6
2.8
39.4
39.7
Minor BPS
59.8
0.39
1.7
76.04
41.4

Associated Gene:

Gene:
NCAPH
Ensembl Gene ID:
ENSAPLG00000008188
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008534
237332 - 246807
9476
ENSAPLT00000022989
237332 - 246807
9476