Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_240031_240337_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

240031 - 240337

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TCCATACCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

CATTCCATACCT

Flanking Amino Acid:

NVTDDNRRCEVDPMFQKTSA

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.5

38.7

Major BPS

78.6

0.71

79.6

32.9

Major PPT

69.2

0.43

0.8

62.8

33.3

Minor 5ss

25.2

-2.8

3.2

31.3

42.9

Minor BPS

58.4

0.34

78.13

43.8

Associated Gene:

Gene:

NCAPH

Ensembl Gene ID:

ENSAPLG00000008188

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022989

237332 - 246807

9476

ENSAPLT00000008534

237332 - 246807

9476