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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2437938_2438320_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2437938 - 2438320
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TTGCTTCCAACA
Flanking Amino Acid:
KQSADISALQDTINKLENEL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
74.5
0.55
0.9
70.3
35.1
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
47
-0.2
1.8
61.3
38.8

Associated Gene:

Gene:
NEFL
Ensembl Gene ID:
ENSAPLG00000028546
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031748
2436882 - 2440287
3406