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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2480091_2480847_F

Intron Information:

Intron Rank:
150177
Intron Class:
major
Intron Phase:
Intron Coordinates:
2480091 - 2480847
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TGTTTCTGGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
75
0.62
1
65.3
41.5
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
57.2
0.08
1.5
63.37
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030712
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025795
2479230 - 2481787
2558