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Intron Name: Anas_platyrhynchos_platyrhynchos_23_2489641_2612683_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

2489641 - 2612683

Intron Length:

123043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TCACTTCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TGTTTCTCATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

77.1

31.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

71.5

0.48

65.3

40.9

Minor 5ss

35.4

-1.7

3.2

46.1

42.2

Minor BPS

56.4

0.28

1.8

76.55

40.4

Associated Gene:

Gene:

STC1

Ensembl Gene ID:

ENSAPLG00000014693

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015307

2489503 - 2668446

178944