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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2553213_2553308_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2553213 - 2553308
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCGA
5'SS Class:
major
3'SS Sequence:
CTTTTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTGTTTCATT
Flanking Amino Acid:
GKPPPPPPPKALKPPVNPRV
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
59.8
46.7
Major BPS
100
1.24
0.5
100
0
Major PPT
85.5
0.8
0.8
81.4
29.4
Minor 5ss
42.8
-0.8
2.9
57.1
47
Minor BPS
52.7
0.17
2.1
77.48
40

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229