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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2554249_2554525_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2554249 - 2554525
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
TCAGACTTAACC
Flanking Amino Acid:
HPGLAIPAQKMNDKKLLLPV
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
72.5
37.3
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
88.4
0.86
0.6
86.9
23.7
Minor 5ss
30.7
-2.2
3.3
39.2
46.2
Minor BPS
62.3
0.36
1.7
68.13
43.1

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229