About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2556746_2557375_R


Intron Information:

Intron Rank:
16

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
2556746 - 2557375

Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTTAGTAGA

5'SS Class:
major

3'SS Sequence:
TTGTACATCACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATAAAT

U12 Branch Point Sequence:
TCTTCGGTGACA

Flanking Amino Acid:
LNGTKCGDGMVCSNGECVPA

Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.1
0.62
1.2
71.9
39.4

Major BPS
74.5
0.61
1
79.6
29.1

Major PPT
72.7
0.51
0.9
66
39.4

Minor 5ss
31.6
-2.1
2.4
32.2
35.6

Minor BPS
48.1
-0.1
2.6
69.88
42.9

Associated Gene:

Gene:
ADAM28

Ensembl Gene ID:

Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

2553107 - 2573335
20229