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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2557533_2558125_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2557533 - 2558125
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
TCGCTGTGCACT
Flanking Amino Acid:
KGGSHVPCKRKDIMCGKLFC
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.2
36.3
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
82.7
0.74
0.8
73.6
36.9
Minor 5ss
43.7
-0.7
2.9
59.5
38.8
Minor BPS
39.8
-0.7
2.4
57.19
45.6

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229