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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2559588_2560098_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2559588 - 2560098
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTGCA
5'SS Class:
major
3'SS Sequence:
TGTTCTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TGTTCTGTCACA
Flanking Amino Acid:
GEECDCGTAEECTNPCCNPE
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
67.7
37.7
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
77.8
0.62
0.9
72
38
Minor 5ss
44.6
-0.6
2.9
59.3
45.3
Minor BPS
49.9
-0
2.4
71.5
41.1

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229