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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2560277_2561097_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2560277 - 2561097
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCAATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCTTTCTCAATA
Flanking Amino Acid:
AKVCIMTDTVSSIIPKLFSS
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.5
0.57
0.9
70.8
33.7
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
60.9
0.34
1.6
66.51
40.8

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229