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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2563474_2564044_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2563474 - 2564044
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
IFGIVNYINTVYKAINIYVA
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.9
0.72
0.8
76.8
31.9
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229