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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2564760_2565153_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2564760 - 2565153
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CAAGCCTTAATA
Flanking Amino Acid:
DIFKSSNSPEMKAYLKAKKY
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
79
0.72
1
80.3
31.7
Major PPT
79.1
0.66
0.7
77.6
30.4
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
64.9
0.46
1.4
65.15
41.5

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229