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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2566207_2567200_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2566207 - 2567200
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTTCCTATACA
Flanking Amino Acid:
QQITTSPQIKDHCYYEGYIQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.5
37.1
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
85.7
0.8
0.8
81
30
Minor 5ss
32.9
-2
2.9
40
45.6
Minor BPS
67.6
0.55
2
83.52
37

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229