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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2567280_2568830_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2567280 - 2568830
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TTACTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAATA
Flanking Amino Acid:
EEVILHLEKNKDLLAKDYTE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.8
0.81
0.8
80.9
30.8
Minor 5ss
48.3
-0.2
2.3
59
39.8
Minor BPS
70.5
0.64
1.3
79.42
30.4

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229