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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2568908_2569573_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2568908 - 2569573
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
AATCTGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAACACTTAAAT
Flanking Amino Acid:
HKRDVERNKEKKYDDTLEYE
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.5
0.6
1
68.9
41.1
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
60.2
0.4
1.6
74.86
40.5

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229