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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2569675_2572393_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2569675 - 2572393
Intron Length:
2719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATAAATA
Flanking Amino Acid:
SVLLLCFLQQGSTSKILPGV
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80
0.67
0.7
73.7
31.4
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
58.8
0.27
1.9
73.34
38.5

Associated Gene:

Gene:
ADAM28
Ensembl Gene ID:
ENSAPLG00000013050
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013690
2553107 - 2573335
20229