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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2683498_2684918_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2683498 - 2684918
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACTAT
U12 Branch Point Sequence:
CAGCAGGTAACT
Flanking Amino Acid:
SPAQPQDADTDATAETPLCD
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
54.3
0.11
1.3
53.1
42.3
Major PPT
86.6
0.82
0.7
81.4
23.5
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
38.7
-0.7
2.5
55.24
46.3

Associated Gene:

Gene:
NKX3-1
Ensembl Gene ID:
ENSAPLG00000028169
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042054
2683162 - 2685493
2332