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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_26921_27603_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26921 - 27603
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTGATTGTATT
Flanking Amino Acid:
VIPEKKETVKKLKEVAFPRA
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.7
0.82
0.6
84.9
22.8
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
43.2
-0.4
1.9
60.83
43.7

Associated Gene:

Gene:
STAMBP
Ensembl Gene ID:
ENSAPLG00000005548
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005765
18031 - 34623
16593