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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2724960_2725099_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2724960 - 2725099
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTCTTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
79.6
35.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
84.4
0.77
0.7
82.2
28.1
Minor 5ss
40.8
-1
3
58.1
46.5
Minor BPS
56.5
0.28
1.8
76.63
40.5

Associated Gene:

Gene:
ENTPD4
Ensembl Gene ID:
ENSAPLG00000014823
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015483
2724713 - 2733500
8788