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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2725219_2725489_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2725219 - 2725489
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CCTCTCTGAATT
Flanking Amino Acid:
MGRISISCLLPA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
74
0.6
1
65.6
41.1
Major PPT
70.4
0.46
0.9
66.9
38.3
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
57.6
0.32
1.5
69.48
41.9

Associated Gene:

Gene:
ENTPD4
Ensembl Gene ID:
ENSAPLG00000014823
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015483
2724713 - 2733500
8788