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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2727858_2728101_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2727858 - 2728101
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTATCC
Flanking Amino Acid:
VLGRFEHTDDEDEAIVEVHV
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
91
0.92
0.7
85.4
34.3
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
71.4
0.65
1.5
81.41
33.2

Associated Gene:

Gene:
ENTPD4
Ensembl Gene ID:
ENSAPLG00000014823
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015483
2724713 - 2733500
8788