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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2728257_2729738_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2728257 - 2729738
Intron Length:
1482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATTATC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATACCTAATC
Flanking Amino Acid:
KTVSFASSQQEEVAKNLLAE
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
79.3
34.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.6
0.67
0.8
72.8
32.2
Minor 5ss
36.7
-1.5
2.6
46.7
41.5
Minor BPS
59.4
0.28
1.8
73.4
37

Associated Gene:

Gene:
ENTPD4
Ensembl Gene ID:
ENSAPLG00000014823
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015483
2724713 - 2733500
8788