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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2731480_2731758_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2731480 - 2731758
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCCTT
5'SS Class:
weak_major
3'SS Sequence:
CGATTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTCTCTTCGATT
Flanking Amino Acid:
ILYRTRFLPLRDIQQENFRG
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.4
1.3
63.8
47.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
80
0.68
0.9
76.9
37
Minor 5ss
48.3
-0.2
3.2
74.1
42.2
Minor BPS
55.8
0.26
1.6
70.39
41.7

Associated Gene:

Gene:
ENTPD4
Ensembl Gene ID:
ENSAPLG00000014823
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015483
2724713 - 2733500
8788