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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2736792_2737369_F

Intron Information:

Intron Rank:
124713
Intron Class:
major
Intron Phase:
Intron Coordinates:
2736792 - 2737369
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CCTTTCTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.7
0.65
0.9
75.4
33.1
Minor 5ss
42.6
-0.8
3.1
56.9
41.9
Minor BPS
72.2
0.69
1.2
73.38
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017223
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044342
2736005 - 2739143
3139
ENSAPLT00000027571
2736476 - 2737709
1234