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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2741473_2749138_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2741473 - 2749138
Intron Length:
7666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
CTTACTCAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
85.6
0.8
0.8
83.6
31.4
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
49.2
0.02
2
72.98
44

Associated Gene:

Gene:
LOXL2
Ensembl Gene ID:
ENSAPLG00000006034
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006295
2741356 - 2781457
40102