Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2778894_2779625_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2778894 - 2779625

Intron Length:

732

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGGGG

5'SS Class:

major

3'SS Sequence:

CCTCGCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

GGTAGCTTCATG

Flanking Amino Acid:

DVPPGDYLFQVVINPNYEVA

Intron Amino Acid Position:

714

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

52.2

44.9

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

70.5

0.46

0.8

35.1

Minor 5ss

26.9

-2.7

3.7

37.8

Minor BPS

44.1

-0.6

2.2

49.45

44.4

Associated Gene:

Gene:

LOXL2

Ensembl Gene ID:

ENSAPLG00000006034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019519

2745328 - 2781364

36037

ENSAPLT00000006295

2741356 - 2781457

40102