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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2781228_2781403_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2781228 - 2781403
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTCCACC
5'SS Class:
weak_major
3'SS Sequence:
CTTCCCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATTTCCTAAAGA
Flanking Amino Acid:
DHFSGLTNNKVLGPPCVSCN
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.2
58.5
40.7
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
69.7
0.44
0.9
67.4
32.7
Minor 5ss
46.8
-0.3
2.5
61.4
43.2
Minor BPS
64.3
0.44
2
77.53
39.6

Associated Gene:

Gene:
LOXL2
Ensembl Gene ID:
ENSAPLG00000006034
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006295
2741356 - 2781457
40102