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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2833329_2833429_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2833329 - 2833429
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCA
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACGCAA
U12 Branch Point Sequence:
CGCAACTGGAGA
Flanking Amino Acid:
AVNRARRPLARPIKPNEILP
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
61.3
39.3
Major BPS
46.3
-0.2
1.2
53
34.1
Major PPT
87.8
0.85
0.7
80.6
31.5
Minor 5ss
25.4
-2.8
3.1
30.7
42.7
Minor BPS
39.4
-0.8
1.8
41.43
39.1

Associated Gene:

Gene:
RHOBTB2
Ensembl Gene ID:
ENSAPLG00000005141
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005343
2832298 - 2834185
1888