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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2833616_2833718_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2833616 - 2833718
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
CTCTTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCCT
U12 Branch Point Sequence:
TCTTCCTCCTCC
Flanking Amino Acid:
HHKDRRFAYGRSDVVVLCFS
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
34.6
-0.9
4.2
73.6
41.8
Major PPT
81.3
0.7
0.7
76.4
25.7
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
40.6
-0.7
3.6
66.27
45.4

Associated Gene:

Gene:
RHOBTB2
Ensembl Gene ID:
ENSAPLG00000005141
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005343
2832298 - 2834185
1888