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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2833823_2833983_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2833823 - 2833983
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TTTTTCTTCCCG
Flanking Amino Acid:
AIDQYRVCQEVLERSRDVVD
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
85.3
0.79
0.7
81.2
23.9
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
44.7
-0.5
3.6
70.32
43.3

Associated Gene:

Gene:
RHOBTB2
Ensembl Gene ID:
ENSAPLG00000005141
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005343
2832298 - 2834185
1888