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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2849676_2850803_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2849676 - 2850803
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
GCGGCACTAATC
Flanking Amino Acid:
TLGSPDSEFCRGDLEVIYPQ
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
43.5
-0.5
1.9
48.64
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028005
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045743
2844179 - 2877518
33340
ENSAPLT00000028283
2848766 - 2875839
27074
ENSAPLT00000017652
2846484 - 2877518
31035