Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2850937_2875584_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2850937 - 2875584

Intron Length:

24648

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCAAAT

U12 Branch Point Sequence:

CGTGCCCAAATG

Flanking Amino Acid:

PRVRYPRADKSKKYVLVLVD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

52.4

0.06

1.1

58.8

34.5

Major PPT

81.6

0.71

0.7

75.8

26.2

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

43.6

-0.6

2.1

48.17

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028005

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045743

2844179 - 2877518

33340

ENSAPLT00000028283

2848766 - 2875839

27074

ENSAPLT00000017652

2846484 - 2877518

31035