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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2942650_2942741_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2942650 - 2942741
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCTGGCGGA
5'SS Class:
weak_major
3'SS Sequence:
CTCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
TCTCCCTTCTCT
Flanking Amino Acid:
MGIPFKIGQPK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.4
50.5
43.1
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
19.9
-3.5
3.9
20.9
37.8
Minor BPS
44.4
-0.3
3.6
77.16
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021318
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033499
2942645 - 2949390
6746