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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2942791_2948659_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2942791 - 2948659
Intron Length:
5869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TATTTCTGAGCT
Flanking Amino Acid:
QPKKQIVPKTVERDFEREYG
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73.4
32.4
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
31.8
-2.1
2.7
38.8
40.3
Minor BPS
63.4
0.5
1.7
82.11
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021318
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033499
2942645 - 2949390
6746