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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2952609_2952883_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2952609 - 2952883
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGGCATCTAATC
Flanking Amino Acid:
KRMDAFNQEKVNQIQKTVIE
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.1
0.7
0.7
76.1
26.1
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
45.7
-0.3
1.8
54.31
37.4

Associated Gene:

Gene:
BIN3
Ensembl Gene ID:
ENSAPLG00000004862
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005028
2950341 - 2964116
13776