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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2961509_2963969_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2961509 - 2963969
Intron Length:
2461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTTTGCTCACTT
Flanking Amino Acid:
PSFESLVRAQVVYYTEMHKI
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.3
0.7
0.7
73.7
31.3
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
47.9
-0
2.2
71.5
46

Associated Gene:

Gene:
BIN3
Ensembl Gene ID:
ENSAPLG00000004862
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005028
2950341 - 2964116
13776