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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2968314_2969319_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2968314 - 2969319
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCGGCGGGC
5'SS Class:
weak_major
3'SS Sequence:
TCCCAATAAAAAG|C
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTCTCTTTAATT
Flanking Amino Acid:
QQDNRLLRQQLFPRFLPLAP
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.3
55.3
36.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
49.5
-0
1.1
49.4
36.2
Minor 5ss
19.7
-3.5
4.3
30.4
41.5
Minor BPS
83.8
1.14
1
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028905
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028429
2967873 - 2970111
2239